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Academics
College of Maritime Science and Management
- Department of Merchant Marine
- Department of Shipping and Transportation Management
- Department of Transportation Science
- Department of Marine Engineering
- Bachelor Degree Program in Ocean Business Management

College of Life Sciences
- Department of Food Science
- Department of Aquaculture
- Department of Bioscience and Biotechnology
- Institute of Marine Biology
- Institute of Food Safety and Risk Management
- Bachelor Degree Program in Marine Biotechnology
- Doctoral Degree Program in Marine Biotechnology

College of Ocean Science and Resource
- Department of Environmental Biology and Fisheries Science
- Department of Marine Environmental Informatics
- Institute of Earth Sciences
- Institute of Marine Affairs and Resource Management
Institute of Marine Environment and Ecology
Doctoral Degree Program in Ocean resource and Environmental Changes

College of Engineering
- Department of Mechanical and Mechatronic Engineering
- Department of Systems Engineering and Naval Architecture
- Department of Harbor and River Engineering
- Institute of Materials Engineering
- Bachelor Degree Program in Ocean Engineering Technology
- Doctoral Degree Program in Ocean Engineering Technology

College of Electrical Engineering and Computer Science
- Department of Electrical Engineering
- Department of Computer Science and Engineering
- Department of Communications, Navigation and Control Engineering
- Department of Optoelectronics and Materials Technology
- Institute of Optoelectronic Sciences

College of Humanities and Social Sciences
- Institute of Applied Economics
- Institute of Education
- Institute of Oceanic Culture
- Institute of Applied English
- Teacher Education Center
- Teaching and Research Center of Humanities and Social Sciences
- Bachelor Degree Program in Oceanic Cultural Creative Design Industries
- Bachelor Degree Program in Ocean Tourism Management

College of Ocean Law and Policy
- Bachelor Degree Program in Ocean Law and Policy
- Institute of the Law of the Sea
- Master Degree Program in Ocean Policy

General Education Center

Center of Excellence for the Oceans

Taiwan Marine Education Center

Maritime Development and Training Center